Curriculum Vitae

ARTICLES
  • S. Oh*, Z. Kurt, D. Tsementzi*, M. R. Weigand*, M. Kim*, J. K. Hatt, M. Tandukar, S. G. Pavlostathis, J. C. Spain, and K. T. Konstantinidis. Microbial community degradation of widely used quaternary ammonium disinfectants. Applied and Environmental Microbiology (2014). 80(19):5892-900.
  • H. L. Orellana*, L. M. Rodriguez-R.*, S. Higgins, J. C. Chee-Sanford, R. A. Sanford, K. M. Ritalahti, F. E. Löffler, and K. T. Konstantinidis. Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle. MBio (2014). Jun 3;5(3):e01193-14.
  • R. Poretsky*, L. M. Rodriguez-R*, C. Luo*, D. Tsementzi*, and K. T. Konstantinidis. Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics. PLoS One (2014). Apr 8;9(4):e93827.
  • L. M. Rodriguez-R*, and K. T. Konstantinidis. Bypassing cultivation to identify bacterial species. ASM Microbe Magazine (2014). March issue.
  • C. Luo*, L. M. Rodriguez-R*, and K. T. Konstantinidis. MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences. Nucleic Acids Research (2014). Apr;42(8):e73.
BOOKS
  • K. Konstantinidis and E. Stackebrandt. Defining taxonomic ranks. In The Prokaryotes. M.Dworkin et al (Eds.). New York: Springer-Verlag. To appear in 2013.
  • K. T. Konstantinidis. Metagenomic insights into bacterial species. In Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats. Frans J. de Bruijn editor. John Wiley & Sons, Inc. Hoboken, New Jersey, USA. 2011.
  • J. Cole, K. T. Konstantinidis, R. J. Farris, and J. M. Tiedje. Microbial diversity and phylogeny: extending from rRNAs to genomes. In Environmental Molecular Biology. WT. Liu and J. Jansson (eds). Horizon Scientific Press. Norwich, UK. 2009.
  • K. T. Konstantinidis, and J. M. Tiedje. Microbial diversity and genomics. In Microbial Functional Genomics. J. Zhou, D. K. Thompson, Y. Xu, and J. M. Tiedje (eds.) John Wiley & Sons. Hoboken, New Jersey, 2004, pg. 21-46.
  • K. Konstantinidis. Pesticide residues in cucumber crops in Northern Greece (in Greek). In Integrated management of disease and pest of plants. Aristotle University of Thessaloniki, 2000. (Book series on sustainable agriculture sponsored by the European Union).
PROCEEDINGS
  • Konstantinidis K. T., and J. M. Tiedje. 2004. Modeling DNA microarray performance for genetic studies. 104th American Society for Microbiology, General Meeting, May 23-27, 2004, New Orleans, LA, USA.
  • Konstantinidis K. T., and J. M. Tiedje. 2004. Genomic insights to advance the bacterial species concept. Genomes 2004, April 14-17, Hinxton Cambridgeshire, UK.
  • Konstantinidis K. T., and J. M. Tiedje. 2004. Trends between gene content and genome size in prokaryotic species. 102nd American Society for Microbiology, General Meeting, May 18-22, 2003, Washington, DC, USA.
  • Konstantinidis K. T., N. Isaacs, S. Simpson, D. Long, and T. L. Marsh. 2001. Characterization of copper-resistant bacteria from a contaminated superfund site. 101st American Society for Microbiology, General Meeting, May 20-24, 2001, Orlando, Fl, USA.
PRESENTATIONS
  • M.J. Soto-Giron*, J. Santo Domingo, and K. T. Konstantinidis. Metagenomic analysis of shower biofilms from hospitals. Poster Presentation in the 9th International Conference "Genome Biology and Bioinformatics”. Georgia Institute of Technology. November 7-9, 2013. Atlanta, GA, USA.
  • K. T. Konstantinidis, E. R. Johnston*, C. Luo*, L. M. Rodriguez-R*, L. Wu, S. Zhou, K. Xue, Z. He, M. Yuan, Y. Luo, E. A. G. Schuur, J. R. Cole, J. M. Tiedje, and J. Zhou. Expanding the toolkit for comparative metagenomics, implementing it in K-Base, and applying it to the study of the effects of experimental warming in Midwestern and Alaskan soils. 12th Annual Genomic Science Contractor-Grantee Meeting. February 10-12, 2014. Washington D.C., USA.
  • M. J. Soto-Giron*, J. Santo Domingo, and K. T. Konstantinidis. Metagenomic analysis of shower biofilms from hospital in Ohio. Poster Presentation in the 114th General meeting of the American Society for Microbiology. May 17-20, 2014. Boston, MA, USA.
  • M. R. Weigand*, K. T. Konstantinidis, N. J. Ashbolt, and J. W. Santo Domingo. Genome sequencing of environmental Enterococcus faecalis reveals the signature of gut colonization and biomarkers for improved water quality monitoring. In the 114th American Society for Microbiology, General Meeting. May 17-21. Boston, MA, USA.
  • G. M. Maresca*, M. R. Weigand*, R. Krishnan*, J. C. Spain, and K. T. Konstantinidis. Assessing the role of the rare biosphere in microbial community response to perturbation. In the 114th American Society for Microbiology, General Meeting. May 17-21. Boston, MA, USA.